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Submitted by:
Edlira Nano(enano)
Permalink:
https://sourcesup.renater.fr/pm/t_follow.php/3175
 
Category:
Dev for release v.2.0
Task Detail Information (JSON):
application/json or text/plain
 
Percent Complete:
100%
Priority:
5
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Start Date:
2011-06-15
End Date:
2011-07-22
 
Task Summary:
Memory optimization: simple parsing + spectra parsing in slices
Original Comment:
Change the msrun parsing + spectra keeping in RAM and disk. We do a simple parsing in teh beginning, no spectra decompression at all. Then, when needed (i.e. during obiwarp alignment and during quantification) we parse the spectra. To avoid using a lot of RAM we parse teh spectra by slices of msrun of size 400 Mb max maybe.
Assigned to
None
Dependent on task
Calculate rt in msruns non srm only once
Spectrum decompression
Hours
1
Status
Open
 
Field Old Value Date By
percent_complete 20 2011-07-13 08:55 enano
summary Memoru optimization: simple parsing + spectra parsing in slices 2011-06-15 08:43 enano