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SCM Upgrade Information

scm_upgrade_instructions_details

Anonymous Access

Exemple for ki-s :

cd /path/to/your/local/repository/ki-s
git remote rm origin && git remote add origin https//git.renater.fr/anonscm/git/ki-s/ki-s.git

Developer Access

Substitute developername with the proper value.

Exemple for ki-s :

cd /path/to/your/local/repository/ki-s
git remote rm origin && git remote add origin git+ssh://developername@git.renater.fr:2222/scmrepos/git/ki-s/ki-s.git
# Il sera probablement nécessaire de faire un pull avant tout commit :
git pull origin <branch>


Project description

Help tool to calculate shared K-mers and ANI between genomic sequences.
Shared K-mers is a good estimate of the phylogenetic distance between closely related genomic sequences.
Shared K-mers allows very fast taxonomic assignement.
Tools to generate representations of similarity matrix.
Circle packing representation improves visualization of large similarity matrix.

Etablishment : INRA

Project Information

Tags: systematics, taxonomy, comparative genomics, k-mers


This project has not yet categorized itself in the Trove Software Map Registered: 2018-01-12 15:22
Activity Ranking: 0
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