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SCM Upgrade Information

scm_upgrade_instructions_details

Anonymous Access

Exemple for skif :

cd /path/to/your/local/repository/skif
git remote rm origin && git remote add origin https//git.renater.fr/anonscm/git/skif/skif.git

Developer Access

Substitute developername with the proper value.

Exemple for skif :

cd /path/to/your/local/repository/skif
git remote rm origin && git remote add origin git+ssh://developername@git.renater.fr:2222/scmrepos/git/skif/skif.git
# Il sera probablement nécessaire de faire un pull avant tout commit :
git pull origin <branch>


Project description

SkIf : Specific k-mers Identification.

SkIf is a comparative genomics tool that detect genomic regions (from SNPs to genomic islands) specifically associated to a group of organisms (defined by the user).

SkIf can be employed to extract a specific genomic region related to a trait of interest.

SkIf was developed in C ++ and sequence reading is done using Bio++ bpp-seq library.

Etablishment : I.N.R.A.

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