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Project description

SkIf2 is a comparative genomic tool that detect genomic regions (from SNPs to genomic islands) specifically associated to a group of organisms (defined by the user).

SkIf2 can be employed to extract a specific genomic region related to a trait of interest.

SkIf2 is a new implementation of SkIf (Specific k-mers Identification). SkIf2 allows to obtain 100% identical results to SkIf much faster and using less RAM, then SkIf2 can be used on hundreds or thousands of genomes.

SkIf2 was developed in C++ and is a software tool relying on GATB-CORE library.

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This project has not yet categorized itself in the Trove Software Map Registered: 2021-07-05 08:52
Activity Ranking: 131
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