Home My Page Projects Code Snippets Project Openings

Tag Cloud

3d registration AADL Aggregation Alfresco Android Annuaire Binary Automata Blackboard C C++ CALdav CMIS CMS CPD CQP CRONE CheMoocs ChemFlow Correspondants Formation DIY Data Envelopment Analysis Data Mining Deployment Distributed Computing ESUP Eclipse RCP Eclipse WTP Elgg Esup-Commons Experiments FPGA Forest Fortran Fortran 90 Fractional differentiation GWT Genotypage Geolocalisation Git Grid Histogramme IBMR IDL IP ISBP JSF Java Joomla LED display LMS Linux Lodel MAR MATLAB MIR MOOC MPI MTGAUE Mac Matlab Mobile Model-Checking Moodle NIR NLP Network Neuroscience ODF OEF OSC Octave Open Sound Control OpenACC OpenMP Ori-Oai PDE's PFU PHP Peer-to-Peer Perl Petri Nets Podcast Producer v2 Presburger Logic Primer Python R R package RNA RNA-SEQ SAKAI SIFAC SSR Saint-Venant Satellite Image Time Series Scilab Search Simulation Simulink Snakemake Sockets TAL TCP TE TEI TEI. Transformation de modeles Trinidad UDP Unicode VHDL Verification WIMS Workflow XML XSLT acces accessibilite acquisition ade affiche planning akka algorithm alignment alisma analyse texte analysis analytic solutions annuaire anonymization arXiv architecture d'entreprise astronomie astrophysics astrophysique atmosphere auth bibliotheque bibliotheques bioinformatics bioinformatique black box c c++ c2i c2i2e cable cable yarding calcul calcul scientifique calendrier carte cartographie case-control catalogue certification chemometrics chimie chimique climate cluster cmake cnrs collections commons v2 comparative genomics comptage computer science conception de service connexions reseau controle counting covoiturage crb cytometry data analysis data mining data processing database dce debardage debian demande design thinking development methodology differential expression digital transformation displacement django docker docker-compose dom draeger drager e-education economics editeur editeurs editor electrique energie esup esup-news exercice exercices interactifs exposure extracted ion chromatogram federation file finite element firewall flash floods foret formation permanente formations fortran forwardder framework free surface galaxy gas monitoring genetics genomic selection genotypic data gestion git handler horde hyperplanning i18n ical ics idp image image processing infrared infrared data infrared measurements infrared spectra infrastructure integer interoperability inventaire inversion ion mass isotopic pattern java javascript jsonrpc k-mers kernel kerrighed kit labo l10n lamp lims linguistique logging magnetohydrodynamics mapping mass spectrometry materiel vegetal mathematics matlab messagerie mission missions mobility model model model checking model prediction modelisation moissonnage moneo monetique monitoring morphologic filters motif-detection mudslide multiservice multivariate model munin mutualisation neural networks non integer differentiation observatoire virtuel ods operation opininon dynamics ordre ordres outils partition function peak calling peak detection pedagogie peptide performance permutation method physics pl planning plateforme point-cloud population genetics porteur portlet postgresql predict biochemical content preprocessing privacy production produit produits dangereux protein protein design protein protein interaction proteomics pyff python python3 qooxdoo qt5 quality quality alignment quantification radio ransac raspberry raspbian read read quality recommender systems referentiel regard regional model registration reprographie reseau reseaux de neurones ressources electroniques road users robotics routines saml satellite satellite optical images scala scons script scripts security sendmail sensor sequencing sequencing read alignment server service service design shallow water shared tools shibboleth signal processing simulation skidder skill repository smtp snmp snow soffice spectra plot spectrometer spectroscopy spectrum spectrum viewer spip statistical tests statistics statistiques stock stream suvi des connexions tagger taux d'utilisation telephonie text analysis textometrie textometry time-series timeseries toulbar2 tracteur traffic bottleneck transformation numerique uPortal unitary events urbanisation user friendly vcal verification formelle virtuel vision vulnerability weather web webofsciences wims wordpress workflow write xmlsectool
4 projects in result set.
GRIP (Gestion Réseaux Infra Physique) - GRIP est une interface web de gestion de l'infrastructure physique d'un réseau. Elle permet de modéliser les différent éléments des locaux techniques ainsi que les liens entre eux, et d'analyser leurs interactions.
Tags: modelisation, infrastructure, reseau, Perl

Activity Percentile: 13
Activity Ranking: 97
Registered: 2013-10-14 12:06

isbpFinder - isbpFinder is a Perl script dedicated to design ISBP (Insertion Site Based Polymorphism) markers. It allows the creation of features representing primers/amplicons covering the junction between 2 transposable elements (TEs) in order to obtain a graphical view of the different markers designed by viewing the feartures through a sequence annotation software such as "Artemis". isbpFinder can generate output files in CSV, EMBL and GFF format containing TEs and amplicons/primers. IsbpFinder is based on the following programs: - "RepeatMasker" for TE detection - "Primer3" for primer design for TE junction amplification. For more details about ISBP markers, please read "Paux et al., Plant Biotechnology Journal 2010(8):196-210" ( [url=http://www.ncbi.nlm.nih.gov/pubmed/20078842]test[/url] )
Tags: ISBP, Primer, TE, Perl
This project has not yet categorized itself in the Trove Software Map

Activity Percentile: 0
Activity Ranking: 0
Registered: 2015-06-03 16:00

MoBiDiCC - MoBiDiCC stand for Motif Binding in Disease with Case-Control data. It aims to identify protein motif mostly associated with case data (or control). It computes and tests all possible motifs for a known protein.
Tags: motif-detection, case-control, Perl, protein

Activity Percentile: 0
Activity Ranking: 0
Registered: 2015-08-10 14:52

ssrFinder - ssrFinder.pl is used to develop Simple Sequence Repeat (SSR) markers from a list of query DNA sequences provided in FASTA format. It uses a regular expression to identify all SSR motifs along the input sequences. Any tract of repetitive DNA in which a k-mer of length k repeated at least n times will be labeled as a potential SSR marker: k=1, n>=12 ex: AAAAAAAAAAAA k=2, n>=6 ex: ATATATATATAT k=3, n>=4 ex: ATCATCATCATC k=4, n>=3 ex: ATCGATCGATCG For each SSR identified in the list of query sequences, the script is able to design a pair of primers located on each side of the repeated motif. These primer sequences can then be used for DNA amplification by Polymerase Chain Reaction (PCR).
Tags: Primer, SSR, Perl
This project has not yet categorized itself in the Trove Software Map

Activity Percentile: 0
Activity Ranking: 0
Registered: 2015-06-03 15:50

Click to toggle
[8] Uninitialized string offset: 0 (/opt/gforge/common/include/gettext.php at 67)
[8] Uninitialized string offset: 1 (/opt/gforge/common/include/gettext.php at 67)