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Displaying results 1-4 out of 4 total.

GRIP (Gestion Réseaux Infra Physique) - GRIP est une interface web de gestion de l'infrastructure physique d'un réseau. Elle permet de modéliser les différent éléments des locaux techniques ainsi que les liens entre eux, et d'analyser leurs interactions.
Tags: modelisation, infrastructure, reseau, Perl

Activity Percentile: 10
Activity Ranking: 153
Registered: 2013-10-14 12:06

isbpFinder - isbpFinder is a Perl script dedicated to design ISBP (Insertion Site Based Polymorphism) markers. It allows the creation of features representing primers/amplicons covering the junction between 2 transposable elements (TEs) in order to obtain a graphical view of the different markers designed by viewing the feartures through a sequence annotation software such as "Artemis". isbpFinder can generate output files in CSV, EMBL and GFF format containing TEs and amplicons/primers. IsbpFinder is based on the following programs: - "RepeatMasker" for TE detection - "Primer3" for primer design for TE junction amplification. For more details about ISBP markers, please read "Paux et al., Plant Biotechnology Journal 2010(8):196-210" ( [url=]test[/url] )
Tags: ISBP, Primer, TE, Perl
This project has not yet categorized itself in the Trove Software Map
Activity Percentile: N/A
Activity Ranking: N/A
Registered: 2015-06-03 16:00

MoBiDiCC - MoBiDiCC stand for Motif Binding in Disease with Case-Control data. It aims to identify protein motif mostly associated with case data (or control). It computes and tests all possible motifs for a known protein.
Tags: motif-detection, case-control, Perl, protein

Activity Percentile: N/A
Activity Ranking: N/A
Registered: 2015-08-10 14:52

ssrFinder - is used to develop Simple Sequence Repeat (SSR) markers from a list of query DNA sequences provided in FASTA format. It uses a regular expression to identify all SSR motifs along the input sequences. Any tract of repetitive DNA in which a k-mer of length k repeated at least n times will be labeled as a potential SSR marker: k=1, n>=12 ex: AAAAAAAAAAAA k=2, n>=6 ex: ATATATATATAT k=3, n>=4 ex: ATCATCATCATC k=4, n>=3 ex: ATCGATCGATCG For each SSR identified in the list of query sequences, the script is able to design a pair of primers located on each side of the repeated motif. These primer sequences can then be used for DNA amplification by Polymerase Chain Reaction (PCR).
Tags: Primer, SSR, Perl
This project has not yet categorized itself in the Trove Software Map
Activity Percentile: N/A
Activity Ranking: N/A
Registered: 2015-06-03 15:50