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8 projects in result set.
impact - iMulti PArametric Cytometry Tools - an integrated set of interactive tools for multi parametric cytometry http://impact.marseille.inserm.fr
Tags: cytometry, data analysis, bioinformatics, R
This project has not yet categorized itself in the Trove Software Map


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Registered: 2016-05-25 06:39

MeV - MeV (Multiple Experiment Viewer) is a Java tool for genomic data analysis. MeV provides an intuitive graphical interface for clustering, classification, statistical analysis and theme discovery. MeV help analyzing many types of data. Try it! Our goal is to improve some functionalities, correct bugs and ease its use for omics analysis. The original and stopped MeV is at http://www.tm4.org/mev.html
Tags: bioinformatics, R, statistics, data analysis

Activity Percentile: 0
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Registered: 2016-05-27 17:40

neuro-stat-ljad - This is a fork of neuro-stat code developed by Yann Bouret (see https://github.com/ybouret/neuro-stat). It is a C++ library providing an R interface to perform statistical tests in neuroscience.
Tags: permutation method, MTGAUE, Neuroscience, R, statistical tests, statistics, unitary events
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Registered: 2017-05-22 14:47

productivity - An R package to compute indices of productivity and profitability using Data Envelopment Analysis (DEA)
Tags: R, R package, economics, performance, production, Data Envelopment Analysis

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Registered: 2017-05-03 15:48

Random Forest ABC for IM model (micros) - Script in R to perform an Approximate Bayesian Computation (ABC) analysis under the Isolation with Migration model from microsatellite data. Demographic history was inferred from microsatellite data using an approximate Bayesian computation (ABC) approach via random forests (Marin et al. 2016; Pudlo et al. 2016). In this approach, data is simulated from the demographic model with parameter values taken from prior probability distributions and data is transformed into summary statistics. Random forests are used to learn about the parameters from the simulated summary statistics. The resulting random forests can then be used to estimate the posterior probability distributions of parameters. In this analysis, a model of two populations (eastern and western clusters) is evaluated. Each population is characterized by a parameter θ (θW=4NWμ and θE=4NEμ, where NW is the effective population size of the western population, NE is the effective population size of the eastern population, and μ is the mutation rate). Western population is founded by individuals from the eastern population at time T=t/4NW (time tF measured in number of generations). Two concurrent models are evaluated regarding the presence or absence of gene flow between the two populations. In the case of presence of gene flow there is an additional parameter, the scaled migration rate M=4NWm. Microsatellites are assumed to mutate following a generalized stepwise mutation model (GSM), in which the number of repeat units gained or lost in each mutation is taken from a geometric distribution with parameter PGSM. Data under this model is generated by simulation using coalescent simulator ms (Hudson 2002) with a custom script (see below) to transform its output into microsatellite data. Each simulated data set was summarized by statistics used in population genetics to characterize microsatellite genetic diversity and population differentiation, known to be informative about demography. Data input: file in STRUCTURE format (.str) with alleles coded in number of repeats (microsatellite data), two rows per individual, second column indicating the population, missing data coded as -9
Tags: population genetics, R
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Registered: 2017-01-24 09:53

tdms - tdms, a R package to work with Tabulated Data Multiple Samples files (TDMS). The TDMS format holds a numerical matrix as long as annotations on its rows (usually genes) and its columns (usually columns). This format introduced in TM4/MeV for transciptomics analyses. It is adopted by JExpress, GENE-E and others. Full-featured tools based on the tdms package are included. mev-prep extends the way of pre-processing the numerical matrix. mev-pivot summarises the matrix according groups defined in the anntotations.
Tags: bioinformatics, R, statistics, data analysis
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Registered: 2016-07-05 12:07

TXM - Développement de la plateforme TXM
Tags: textometrie, textometry, Unicode, CQP, R, text analysis, Eclipse RCP, GWT, NLP, TAL, statistiques, TEI, TEI., XML, XSLT

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Registered: 2015-07-27 15:22

UnitEvents_package - R package using neuro-stat code (see https://github.com/ybouret/neuro-stat.git and neuro-stat-ljad project). To perform MTGAUE and permutation methods.
Tags: Neuroscience, R, statistical tests, statistics, unitary events, permutation method, MTGAUE
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Registered: 2017-05-02 08:07

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