Home My Page Projects Code Snippets Project Openings

Tag Cloud

Android C C++ ESUP Esup-Commons Experiments Git JSF Java Linux MATLAB MTGAUE Markov Decision Processes Matlab Neuroscience ODF Octave PHP Perl Primer Python Python3 R Satellite Image Time Series Scilab Simulation Simulink TEI TEI. WIMS XML XSLT acquisition affiche planning algorithm alignment analyse texte annuaire astronomie astrophysics astrophysique auth bibliotheque bibliotheques bioinformatics bioinformatique c c++ calcul scientifique calendrier cnrs comparative genomics computer science controle crb data data analysis data processing database django editeur editeurs editor environment esup exercices interactifs file formations framework genetics gestion git hydrologie ical ics image processing inventaire java javascript jsonrpc k-mers lamp library linguistique logging mapping mass spectrometry mathematics matlab mission model modelisation monitoring mudslide pedagogie peptide permutation method php pl portlet postgresql protein proteomics python python3 qooxdoo qt5 quality quality alignment quantification read satellite optical images script scripting scripts security sequencing signal processing simulation spectrum statistical tests statistics statistiques toolbox unitary events user friendly web wordpress workflow zone critique
2 projects in result set.
KI-S - Help tool to calculate shared K-mers and ANI between genomic sequences. Shared K-mers is a good estimate of the phylogenetic distance between closely related genomic sequences. Shared K-mers allows very fast taxonomic assignement. Tools to generate representations of similarity matrix. Circle packing representation improves visualization of large similarity matrix.
Tags: systematics, taxonomy, comparative genomics, k-mers
This project has not yet categorized itself in the Trove Software Map

Activity Percentile: 0
Activity Ranking: 0
Registered: 2018-01-12 15:22

SkIf - SkIf : Specific k-mers Identification. SkIf is a comparative genomics tool that detect genomic regions (from SNPs to genomic islands) specifically associated to a group of organisms (defined by the user). SkIf can be employed to extract a specific genomic region related to a trait of interest. SkIf was developed in C ++ and sequence reading is done using Bio++ bpp-seq library.
Tags: comparative genomics, k-mers

Activity Percentile: 0
Activity Ranking: 0
Registered: 2016-05-25 14:14