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KI-S - Help tool to calculate shared K-mers and ANI between genomic sequences. Shared K-mers is a good estimate of the phylogenetic distance between closely related genomic sequences. Shared K-mers allows very fast taxonomic assignement. Tools to generate representations of similarity matrix. Circle packing representation improves visualization of large similarity matrix.
Tags: systematics, taxonomy, comparative genomics, k-mers
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Registered: 2018-01-12 15:22

SkIf - SkIf : Specific k-mers Identification. SkIf is a comparative genomics tool that detect genomic regions (from SNPs to genomic islands) specifically associated to a group of organisms (defined by the user). SkIf can be employed to extract a specific genomic region related to a trait of interest. SkIf was developed in C ++ and sequence reading is done using Bio++ bpp-seq library.
Tags: comparative genomics, k-mers

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Registered: 2016-05-25 14:14