wiki du projet skif

git clone git://git.renater.fr/skif.git

Run Example with singularity image :

cd skif/example

singularity run ../skif.simg SkIf -b genomes_fasta/ -k 24 -s n -o specific_output -a dna -g group1.txt

singularity run ../skif.simg getLongestKmers.pl -f specific_output_24-mers_present_gp1_G1.csv -o longspecific

singularity run ../skif.simg getLongestKmersNC.pl -f specific_output_24-mers_present_gp1_G1.csv -k 24 -o longlong